Known SARS-CoV-2 Mutations
This file lists references for known SARS-CoV-2 mutations.
You can test for these mutations using Pathogenwatch.
You can find the source code on Gitlab where you can add additional mutations or citations.
We update Pathogenwatch periodically so everyone can start looking for important mutations in their own sequences.
The variant typing software was originally created by Ben Jackson.
Additional mutations come from:
Amino Acid Mutations
| Type | Amino Acid |
| CDS | S |
| Position | 22225 |
| Source |
| Type | Amino Acid |
| CDS | S |
| Position | 22984 |
| Source |
| Type | Amino Acid |
| CDS | S |
| Position | 23437 |
| Source |
| Type | Amino Acid |
| CDS | S |
| Position | 24052 |
| Source |
| Type | Amino Acid |
| CDS | S |
| Position | 23401 |
| Source |
| Type | Amino Acid |
| CDS | S |
| Position | 21799 |
| Source |
| Type | Amino Acid |
| CDS | S |
| Position | 23011 |
| Source |
| Type | Amino Acid |
| CDS | S |
| Position | 23011 |
| Source |
| Type | Amino Acid |
| CDS | S |
| Position | 23011 |
| Source |
| Type | Amino Acid |
| CDS | S |
| Position | 23011 |
| Source |
| Type | Amino Acid |
| CDS | S |
| Position | 23029 |
| Source |
| Type | Amino Acid |
| CDS | S |
| Position | 22897 |
| Source |
| Type | Amino Acid |
| CDS | S |
| Position | 22897 |
| Source |
| Type | Amino Acid |
| CDS | S |
| Position | 22897 |
| Source |
| Type | Amino Acid |
| CDS | S |
| Position | 22009 |
| Source |
| Type | Amino Acid |
| CDS | S |
| Position | 22009 |
| Source |
| Type | Amino Acid |
| CDS | S |
| Position | 22693 |
| Source |
| Type | Amino Acid |
| CDS | S |
| Position | 22891 |
| Source |
| Type | Amino Acid |
| CDS | S |
| Position | 22891 |
| Source |
| Type | Amino Acid |
| CDS | S |
| Position | 22915 |
| Source |
| Type | Amino Acid |
| CDS | S |
| Position | 22924 |
| Source |
| Type | Amino Acid |
| CDS | S |
| Position | 22876 |
| Source |
| Type | Amino Acid |
| CDS | S |
| Position | 22879 |
| Source |
| Type | Amino Acid |
| CDS | S |
| Position | 22909 |
| Source |
| Type | Amino Acid |
| CDS | S |
| Position | 23062 |
| Source |
| Type | Amino Acid |
| CDS | S |
| Position | 23062 |
| Source |
| Type | Amino Acid |
| CDS | orf1b |
| Position | 14406 |
| Source |
| Type | Amino Acid |
| CDS | S |
| Position | 23602 |
| Source |
| Type | Amino Acid |
| CDS | Orf8 |
| Position | 27971 |
| Source |
| Type | Amino Acid |
| CDS | S |
| Position | 23038 |
| Source |
| Type | Amino Acid |
| CDS | S |
| Position | 22597 |
| Source |
| Type | Amino Acid |
| CDS | S |
| Position | 22597 |
| Source |
| Type | Amino Acid |
| CDS | N |
| Position | 28975 |
| Source |
| Type | Amino Acid |
| CDS | S |
| Position | 22990 |
| Source |
| Type | Amino Acid |
| CDS | S |
| Position | 21853 |
| Source |
| Type | Amino Acid |
| CDS | orf1ab |
| Position | 3265 |
| Source |
| Type | Amino Acid |
| CDS | S |
| Position | 24925 |
| Source |
| Type | Amino Acid |
| CDS | S |
| Position | 22894 |
| Source |
| Type | Amino Acid |
| CDS | S |
| Position | 23008 |
| Source |
| Type | Amino Acid |
| CDS | S |
| Position | 22906 |
| Source |
| Type | Amino Acid |
| CDS | S |
| Position | 22918 |
| Source |
| Type | Amino Acid |
| CDS | S |
| Position | 23083 |
| Source |
Deletion Mutations
| Type | Deletion |
| Position | 11287 |
| Length | 9 |
| Source |
| Type | Deletion |
| Position | 21764 |
| Length | 6 |
| Source |
| Type | Deletion |
| Position | 21766 |
| Length | 3 |
| Source |
SNP Mutations